SMTL ID : 8oyl.1

Coiled-Coil Domain of Human STIL, Q729L Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: L.1, S.2, A.5 Chain B: L.1, S.2, A.5 Ligands: NA.7 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.2, A:S.2, B:S.2 NA.7: 7 residues within 4Å: Chain A: L.1, S.2, A.5 Chain B: L.1, S.2, A.5 Ligands: NA.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.2, A:S.2, B:S.2 NA.13: 7 residues within 4Å: Chain C: L.1, S.2, A.5 Chain D: L.1, S.2, A.5 Ligands: NA.19 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:S.2, D:S.2, D:S.2 NA.19: 7 residues within 4Å: Chain C: L.1, S.2, A.5 Chain D: L.1, S.2, A.5 Ligands: NA.13 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:S.2, D:S.2, D:S.2

8 x CD: CADMIUM ION(Non-covalent)

CD.2: 2 residues within 4Å: Chain A: E.11 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.11, A:E.11 CD.3: 4 residues within 4Å: Chain A: D.4, R.7 Ligands: CL.5, CL.6 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.4 CD.8: 2 residues within 4Å: Chain B: E.11 Ligands: CL.10 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.11, B:E.11 CD.9: 4 residues within 4Å: Chain B: D.4, R.7 Ligands: CL.11, CL.12 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.4 CD.14: 2 residues within 4Å: Chain C: E.11 Ligands: CL.16 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.11, C:E.11 CD.15: 4 residues within 4Å: Chain C: D.4, R.7 Ligands: CL.17, CL.18 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.4 CD.20: 2 residues within 4Å: Chain D: E.11 Ligands: CL.22 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:E.11, D:E.11 CD.21: 4 residues within 4Å: Chain D: D.4, R.7 Ligands: CL.23, CL.24 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.4

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: R.7, E.11 Ligands: CD.2 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: D.4 Ligands: CD.3, CL.6 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: D.4 Ligands: CD.3, CL.5 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: R.7, E.11 Ligands: CD.8 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: D.4 Ligands: CD.9, CL.12 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: D.4 Ligands: CD.9, CL.11 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain C: R.7, E.11 Ligands: CD.14 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: D.4 Ligands: CD.15, CL.18 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain C: D.4 Ligands: CD.15, CL.17 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain D: R.7, E.11 Ligands: CD.20 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain D: D.4 Ligands: CD.21, CL.24 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain D: D.4 Ligands: CD.21, CL.23 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shamir, M. et al., Molecular Mechanism of STIL Coiled-Coil Domain Oligomerization. Int J Mol Sci (2023)

Release Date

2023-10-18

Peptides

SCL-interrupting locus protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

SCL-interrupting locus protein