SMTL ID : 8ozv.1

Imine Reductase from Ajellomyces dermatitidis in complex with 2,2-difluoroacetophenone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 25 residues within 4Å: Chain A: G.10, L.11, G.12, A.13, M.14, N.33, R.34, T.35, K.38, C.66, Q.67, L.68, S.72, Q.75, T.76, T.93, N.94, I.119, A.121, V.122, P.123 Chain B: G.232, S.233, M.237 Ligands: W65.2 28 PLIP interactions: 25 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:L.11, A:G.12, A:A.13, A:M.14, A:G.15, A:N.33, A:T.35, A:T.35, A:Q.67, A:Q.75, A:T.76, A:N.94, B:G.232, B:G.232 Water bridges: A:R.34, A:R.34, A:R.34, A:K.38, A:K.38, A:K.38, A:K.38, A:L.68, A:A.71, B:S.234 Salt bridges: A:R.34, A:K.38, A:K.38 pi-Cation interactions: A:R.34 NDP.3: 25 residues within 4Å: Chain A: G.232, S.233, M.237 Chain B: G.10, L.11, G.12, A.13, M.14, N.33, R.34, T.35, K.38, C.66, Q.67, L.68, S.72, Q.75, T.76, T.93, N.94, I.119, A.121, V.122, P.123 Ligands: W65.4 28 PLIP interactions: 25 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:L.11, B:G.12, B:A.13, B:M.14, B:G.15, B:N.33, B:T.35, B:Q.67, B:Q.75, B:N.94, A:G.232, A:G.232 Water bridges: B:R.34, B:R.34, B:R.34, B:T.35, B:T.35, B:K.38, B:K.38, B:K.38, B:K.38, B:L.68, B:A.71, A:S.234 Salt bridges: B:R.34, B:K.38, B:K.38 pi-Cation interactions: B:R.34

2 x W65: 2,2-bis(fluoranyl)-1-phenyl-ethanone(Non-covalent)

W65.2: 9 residues within 4Å: Chain A: N.94, V.122, L.173, M.176, Y.177 Chain B: M.237, Q.238, A.241 Ligands: NDP.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.122, A:L.173, B:Q.238 Hydrogen bonds: A:Y.177 W65.4: 9 residues within 4Å: Chain A: M.237, Q.238, A.241 Chain B: N.94, V.122, L.173, M.176, Y.177 Ligands: NDP.3 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Q.238, B:V.122, B:L.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, M. et al., Structure of the imine reductase from Ajellomyces dermatitidis in three crystal forms. Acta Crystallogr.,Sect.F (2023)

Release Date

2023-08-30

Peptides

Oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Oxidoreductase

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