SMTL ID : 8p0z.1

AP01-S2.3 - a variant of a redesigned transferrin receptor apical domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: I.67, T.68, E.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.68, A:T.68 NA.2: 5 residues within 4Å: Chain A: K.36, T.145, S.146, K.149, N.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.145 Water bridges: A:K.10

1 x BO3: BORIC ACID(Non-covalent)

BO3.3: 4 residues within 4Å: Chain A: Y.52, T.53, M.143, V.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.53, A:T.53 Water bridges: A:Y.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sjostrom, D.J. et al., Affinity Maturated Transferrin Receptor Apical Domain Blocks Machupo Virus Glycoprotein Binding. J.Mol.Biol. (2023)

Release Date

2023-09-27

Peptides

Transferrin receptor protein 1, serum form: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transferrin receptor protein 1, serum form