SMTL ID : 8p14.1

USP28 USP domain in complex with Vismodegib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

1 x VIS: 2-chloranyl-~{N}-(4-chloranyl-3-pyridin-2-yl-phenyl)-4-methylsulfonyl-benzamide(Non-covalent)

VIS.1: 14 residues within 4Å: Chain A: V.29, S.110, T.113, H.114, L.117, F.145, G.167, Q.168, T.217, E.219, L.220, S.221, Y.322, C.323 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.29, A:L.117, A:F.145, A:Q.168, A:T.217, A:E.219, A:E.219, A:Y.322 Hydrogen bonds: A:E.219 Halogen bonds: A:S.110

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: Q.243 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: G.257, R.259 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: V.188, E.189 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patzke, J.V. et al., Structural basis for the bi-specificity of USP25 and USP28 inhibitors. Embo Rep. (2024)

Release Date

2024-05-22

Peptides

Ubiquitin carboxyl-terminal hydrolase 28: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin carboxyl-terminal hydrolase 28

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