SMTL ID : 8p1p.1

USP28 in complex with AZ1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: P.37, R.372 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: Q.243, L.373, Y.393, Q.395 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.393

2 x WF0: 2-[[5-bromanyl-2-[[4-fluoranyl-3-(trifluoromethyl)phenyl]methoxy]phenyl]methylamino]ethanol

WF0.3: 17 residues within 4Å: Chain A: F.39, T.113, H.114, L.117, D.118, L.120, E.121, M.141, F.145, Y.146, G.167, Q.168, T.217, E.219, L.377, C.431, M.433 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.117, A:L.117, A:L.117, A:T.217 Hydrogen bonds: A:H.114, A:Q.168, A:Q.168 pi-Stacking: A:F.145 WF0.4: 17 residues within 4Å: Chain B: V.29, T.113, H.114, L.117, D.118, L.120, E.121, M.141, F.145, Y.146, G.167, Q.168, T.217, E.219, L.377, C.431, M.433 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.117, B:L.117, B:L.117, B:T.217 Hydrogen bonds: B:Y.146, B:Q.168 pi-Stacking: B:F.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patzke, J.V. et al., Structural basis for the bi-specificity of USP25 and USP28 inhibitors. Embo Rep. (2024)

Release Date

2024-05-22

Peptides

Ubiquitin carboxyl-terminal hydrolase 28: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin carboxyl-terminal hydrolase 28