SMTL ID : 8p1q.1

USP28 in complex with FT206

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: Q.243, R.372, L.373, Y.393, Q.395, W.400 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.393 DMS.3: 2 residues within 4Å: Chain A: W.7, I.406 No protein-ligand interaction detected (PLIP)

2 x WFT: 3-azanyl-N-[(2S)-6-[(1S,5R)-3,8-diazabicyclo[3.2.1]octan-3-yl]-1,2,3,4-tetrahydronaphthalen-2-yl]-6-methyl-thieno[2,3-b]pyridine-2-carboxamide

WFT.2: 15 residues within 4Å: Chain A: S.110, T.113, L.117, F.145, G.167, Q.168, T.217, E.219, L.220, L.377, H.379, A.383, Y.388, Y.430, C.431 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:T.113, A:L.117, A:F.145, A:F.145, A:T.217, A:E.219, A:H.379, A:Y.388, A:Y.430, A:Y.430 Hydrogen bonds: A:E.219, A:E.219 WFT.4: 15 residues within 4Å: Chain B: S.110, T.113, L.117, F.145, G.167, Q.168, T.217, E.219, L.220, L.377, H.379, Y.388, Y.430, C.431, M.433 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.117, B:F.145, B:T.217, B:H.379, B:Y.388, B:Y.430, B:Y.430 Hydrogen bonds: B:E.219, B:E.219 pi-Stacking: B:Y.430

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauer, F. et al., USP28 in complex with FT206. To Be Published

Release Date

2024-05-22

Peptides

Ubiquitin carboxyl-terminal hydrolase 28: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin carboxyl-terminal hydrolase 28