SMTL ID : 8p2l.1

A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.68 Å

Oligo State

homo-16-mer

Ligands

8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 15 residues within 4Å: Chain A: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.105, A:W.105 Hydrogen bonds: A:R.112, A:Q.116, A:L.154, A:L.154, A:H.192, A:G.325, A:D.328 Salt bridges: A:R.159, A:R.159, A:K.195, A:K.195 NAD.2: 15 residues within 4Å: Chain B: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.105, B:W.105 Hydrogen bonds: B:R.112, B:Q.116, B:L.154, B:L.154, B:H.192, B:G.325, B:D.328 Salt bridges: B:R.159, B:R.159, B:H.192, B:K.195, B:K.195 NAD.3: 15 residues within 4Å: Chain C: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:W.105, C:W.105 Hydrogen bonds: C:R.112, C:Q.116, C:L.154, C:L.154, C:H.192, C:G.325, C:D.328 Salt bridges: C:R.159, C:R.159, C:K.195, C:K.195 NAD.4: 15 residues within 4Å: Chain D: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:W.105, D:W.105 Hydrogen bonds: D:R.112, D:Q.116, D:L.154, D:L.154, D:H.192, D:G.325, D:D.328 Salt bridges: D:R.159, D:R.159, D:H.192, D:K.195, D:K.195 NAD.5: 15 residues within 4Å: Chain E: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:W.105, E:W.105 Hydrogen bonds: E:R.112, E:Q.116, E:L.154, E:L.154, E:H.192, E:G.325, E:D.328 Salt bridges: E:R.159, E:R.159, E:K.195, E:K.195 NAD.6: 15 residues within 4Å: Chain F: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:W.105, F:W.105 Hydrogen bonds: F:R.112, F:Q.116, F:L.154, F:L.154, F:H.192, F:G.325, F:D.328 Salt bridges: F:R.159, F:R.159, F:H.192, F:K.195, F:K.195 NAD.7: 15 residues within 4Å: Chain G: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:W.105, G:W.105 Hydrogen bonds: G:R.112, G:Q.116, G:L.154, G:L.154, G:H.192, G:G.325, G:D.328 Salt bridges: G:R.159, G:R.159, G:K.195, G:K.195 NAD.8: 15 residues within 4Å: Chain H: W.105, R.112, Q.116, E.151, Q.152, I.153, L.154, V.155, R.159, H.192, K.195, G.323, R.324, G.325, D.328 14 PLIP interactions: 14 interactions with chain H Hydrophobic interactions: H:W.105, H:W.105 Hydrogen bonds: H:R.112, H:Q.116, H:L.154, H:L.154, H:H.192, H:G.325, H:D.328 Salt bridges: H:R.159, H:R.159, H:H.192, H:K.195, H:K.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khazma, T. et al., Structure-function analysis of ceTIR-1/hSARM1 explains the lack of Wallerian axonal degeneration in C. elegans. Cell Rep (2023)

Release Date

2023-09-06

Peptides

NAD(+) hydrolase SARM1,NAD(+) hydrolase tir-1: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
J

J
I

K
K

L
L

M
M

N
N

O
O

P
P

NAD(+) hydrolase SARM1,NAD(+) hydrolase tir-1