SMTL ID : 8p2o.1

Dimeric mutant S103R of the BTB domain of ZBTB8A from Xenopus laevis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.20, Q.21, M.36, F.37, K.38, L.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.20, A:R.20, A:M.36, A:K.38 EDO.2: 7 residues within 4Å: Chain A: Y.50, T.69, F.70, D.71, V.72, Y.106 Ligands: EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.50, A:D.71, A:D.71, A:V.72 Water bridges: A:Y.106 EDO.3: 4 residues within 4Å: Chain A: D.17, R.20, D.83, S.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.17, A:R.20, A:S.87 EDO.4: 6 residues within 4Å: Chain A: A.46, S.47, S.48, G.49, K.52, Q.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.47, A:G.49 EDO.5: 4 residues within 4Å: Chain A: E.33, D.71, F.73, S.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.33, A:D.71 EDO.6: 6 residues within 4Å: Chain A: Y.50, L.54, A.68, T.69, F.70 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.50, A:Y.50, A:T.69 EDO.7: 4 residues within 4Å: Chain B: R.20, F.37, K.38, L.82 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.20, B:M.36, B:K.38 EDO.8: 5 residues within 4Å: Chain B: S.47, Q.108, M.109, T.110, D.111 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.110, B:D.111, B:D.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coste, F. et al., Dimeric mutant S103R of the BTB domain of ZBTB8A from Xenopus laevis. To Be Published

Release Date

2024-06-05

Peptides

Zinc finger and BTB domain-containing protein 8A.1-A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zinc finger and BTB domain-containing protein 8A.1-A