SMTL ID : 8p4z.1 (1 other biounit)

Crystal structure of the human CDK7 kinase domain in complex with LDC4297

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x WZ8: 2-[(3R)-piperidin-3-yl]oxy-8-propan-2-yl-N-[(2-pyrazol-1-ylphenyl)methyl]pyrazolo[1,5-a][1,3,5]triazin-4-amine(Non-covalent)

WZ8.1: 13 residues within 4Å: Chain A: L.11, G.12, V.19, A.32, K.34, F.84, D.85, F.86, M.87, E.88, T.89, D.90, L.137 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.11, A:V.19, A:A.32, A:K.34, A:F.84, A:L.137 Hydrogen bonds: A:M.87, A:M.87

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: P.204, F.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.204 GOL.3: 7 residues within 4Å: Chain A: T.221, L.222, P.246, G.247, I.248, L.250, Q.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.246, A:I.248, A:Q.266

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 5 residues within 4Å: Chain A: R.129, R.181, M.182, Y.183, G.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laursen, M. et al., Crystal structure of the human CDK7 kinase domain in complex with LDC4297. To Be Published

Release Date

2023-06-14

Peptides

Cyclin-dependent kinase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 7

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