- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 2 x SPD: SPERMIDINE(Non-covalent)
- 2 x PUT: 1,4-DIAMINOBUTANE(Non-functional Binders)
- 1 x N2P: PENTANE-1,5-DIAMINE(Non-functional Binders)
- 103 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.6: 1 residues within 4Å:- Chain B: C.1372
No protein-ligand interaction detected (PLIP)MG.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.8: 2 residues within 4Å:- Chain B: A.581, G.582
No protein-ligand interaction detected (PLIP)MG.9: 2 residues within 4Å:- Chain B: U.21, G.22
No protein-ligand interaction detected (PLIP)MG.10: 2 residues within 4Å:- Chain B: U.558, U.560
No protein-ligand interaction detected (PLIP)MG.11: 4 residues within 4Å:- Chain B: G.293, G.295, G.555, G.556
No protein-ligand interaction detected (PLIP)MG.12: 4 residues within 4Å:- Chain B: U.569, A.570, A.571, A.572
No protein-ligand interaction detected (PLIP)MG.13: 3 residues within 4Å:- Chain B: C.574, A.576, U.817
No protein-ligand interaction detected (PLIP)MG.14: 2 residues within 4Å:- Chain B: U.810, A.811
No protein-ligand interaction detected (PLIP)MG.15: 3 residues within 4Å:- Chain B: U.851, C.862, A.863
No protein-ligand interaction detected (PLIP)MG.16: 4 residues within 4Å:- Chain B: G.1044, C.1045, A.1171, A.1172
No protein-ligand interaction detected (PLIP)MG.17: 2 residues within 4Å:- Chain B: A.1101, U.1164
No protein-ligand interaction detected (PLIP)MG.18: 5 residues within 4Å:- Chain B: U.1473, A.1474, A.1475, G.1479, G.1480
No protein-ligand interaction detected (PLIP)MG.19: 5 residues within 4Å:- Chain B: A.1475, G.1480, U.1481, A.1482, C.1483
No protein-ligand interaction detected (PLIP)MG.20: 3 residues within 4Å:- Chain B: G.958, A.959, U.1174
No protein-ligand interaction detected (PLIP)MG.21: 2 residues within 4Å:- Chain B: G.946, U.1199
No protein-ligand interaction detected (PLIP)MG.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.23: 1 residues within 4Å:- Chain B: A.158
No protein-ligand interaction detected (PLIP)MG.24: 2 residues within 4Å:- Chain B: A.302, A.303
No protein-ligand interaction detected (PLIP)MG.25: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.26: 2 residues within 4Å:- Chain B: G.556, A.557
No protein-ligand interaction detected (PLIP)MG.27: 3 residues within 4Å:- Chain B: A.393, G.395, C.396
No protein-ligand interaction detected (PLIP)MG.28: 3 residues within 4Å:- Chain B: C.49, U.99, G.100
No protein-ligand interaction detected (PLIP)MG.29: 2 residues within 4Å:- Chain B: G.398, A.545
No protein-ligand interaction detected (PLIP)MG.30: 2 residues within 4Å:- Chain B: C.351, G.353
No protein-ligand interaction detected (PLIP)MG.31: 4 residues within 4Å:- Chain B: A.60, C.326, G.327, C.348
No protein-ligand interaction detected (PLIP)MG.32: 3 residues within 4Å:- Chain B: A.101, G.102, G.285
No protein-ligand interaction detected (PLIP)MG.33: 2 residues within 4Å:- Chain B: U.85, A.86
No protein-ligand interaction detected (PLIP)MG.34: 2 residues within 4Å:- Chain B: A.94, G.327
No protein-ligand interaction detected (PLIP)MG.35: 3 residues within 4Å:- Chain B: C.95, G.96, G.97
No protein-ligand interaction detected (PLIP)MG.36: 2 residues within 4Å:- Chain B: A.160, C.161
No protein-ligand interaction detected (PLIP)MG.37: 2 residues within 4Å:- Chain B: C.164, A.165
No protein-ligand interaction detected (PLIP)MG.38: 2 residues within 4Å:- Chain B: A.605, A.606
No protein-ligand interaction detected (PLIP)MG.39: 5 residues within 4Å:- Chain B: C.368, U.371, G.372, U.383, A.385
No protein-ligand interaction detected (PLIP)MG.40: 2 residues within 4Å:- Chain B: G.413, U.414
No protein-ligand interaction detected (PLIP)MG.41: 4 residues within 4Å:- Chain B: A.446, A.448, A.449, G.478
No protein-ligand interaction detected (PLIP)MG.42: 2 residues within 4Å:- Chain B: G.727, G.728
No protein-ligand interaction detected (PLIP)MG.43: 3 residues within 4Å:- Chain B: G.586, A.587, U.641
No protein-ligand interaction detected (PLIP)MG.44: 2 residues within 4Å:- Chain B: A.779, A.791
No protein-ligand interaction detected (PLIP)MG.45: 1 residues within 4Å:- Chain B: A.778
No protein-ligand interaction detected (PLIP)MG.46: 1 residues within 4Å:- Chain B: C.794
No protein-ligand interaction detected (PLIP)MG.47: 1 residues within 4Å:- Chain B: A.765
No protein-ligand interaction detected (PLIP)MG.48: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.49: 1 residues within 4Å:- Chain B: A.932
No protein-ligand interaction detected (PLIP)MG.50: 2 residues within 4Å:- Chain B: G.939, G.940
No protein-ligand interaction detected (PLIP)MG.51: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.52: 4 residues within 4Å:- Chain B: A.1293, U.1294, U.1295, G.1297
No protein-ligand interaction detected (PLIP)MG.53: 1 residues within 4Å:- Chain B: G.1361
No protein-ligand interaction detected (PLIP)MG.54: 2 residues within 4Å:- Chain B: C.919, G.1361
No protein-ligand interaction detected (PLIP)MG.55: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.56: 2 residues within 4Å:- Chain B: G.16, A.17
No protein-ligand interaction detected (PLIP)MG.57: 3 residues within 4Å:- Chain B: C.578, G.579, U.754
No protein-ligand interaction detected (PLIP)MG.58: 2 residues within 4Å:- Chain B: U.1077, A.1093
No protein-ligand interaction detected (PLIP)MG.59: 5 residues within 4Å:- Chain B: C.974, C.975, U.976, U.977, G.1197
No protein-ligand interaction detected (PLIP)MG.60: 4 residues within 4Å:- Chain B: C.1045, A.1172, A.1173
- Chain D: C.34
No protein-ligand interaction detected (PLIP)MG.61: 1 residues within 4Å:- Chain B: C.574
No protein-ligand interaction detected (PLIP)MG.62: 2 residues within 4Å:- Chain B: U.899, G.900
No protein-ligand interaction detected (PLIP)MG.63: 1 residues within 4Å:- Chain B: C.929
No protein-ligand interaction detected (PLIP)MG.64: 1 residues within 4Å:- Chain B: G.1237
No protein-ligand interaction detected (PLIP)MG.65: 2 residues within 4Å:- Chain B: A.1118, C.1257
No protein-ligand interaction detected (PLIP)MG.66: 3 residues within 4Å:- Chain B: U.916, G.917, U.1368
No protein-ligand interaction detected (PLIP)MG.67: 3 residues within 4Å:- Chain B: G.97, G.98, U.304
No protein-ligand interaction detected (PLIP)MG.68: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.69: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.70: 2 residues within 4Å:- Chain B: G.92, A.321
No protein-ligand interaction detected (PLIP)MG.71: 3 residues within 4Å:- Chain B: C.957, G.1042, U.1043
No protein-ligand interaction detected (PLIP)MG.72: 2 residues within 4Å:- Chain B: A.54, A.349
No protein-ligand interaction detected (PLIP)MG.73: 3 residues within 4Å:- Chain B: C.974, C.975, G.1195
No protein-ligand interaction detected (PLIP)MG.74: 2 residues within 4Å:- Chain B: C.1060, G.1085
No protein-ligand interaction detected (PLIP)MG.75: 5 residues within 4Å:- Chain B: G.1075, U.1076, U.1077, G.1078, G.1090
No protein-ligand interaction detected (PLIP)MG.76: 2 residues within 4Å:- Chain B: C.1277, G.1278
No protein-ligand interaction detected (PLIP)MG.77: 1 residues within 4Å:- Chain B: G.782
No protein-ligand interaction detected (PLIP)MG.78: 2 residues within 4Å:- Chain A: C.1927
- Chain B: U.790
No protein-ligand interaction detected (PLIP)MG.79: 3 residues within 4Å:- Chain B: G.251, U.252, G.262
No protein-ligand interaction detected (PLIP)MG.80: 2 residues within 4Å:- Chain B: U.767, A.799
No protein-ligand interaction detected (PLIP)MG.81: 2 residues within 4Å:- Chain B: A.777, A.796
No protein-ligand interaction detected (PLIP)MG.82: 1 residues within 4Å:- Chain B: A.964
No protein-ligand interaction detected (PLIP)MG.83: 3 residues within 4Å:- Chain B: G.608, A.622, G.623
No protein-ligand interaction detected (PLIP)MG.84: 2 residues within 4Å:- Chain B: G.998, U.1025
No protein-ligand interaction detected (PLIP)MG.85: 3 residues within 4Å:- Chain B: C.999, G.1020, G.1022
No protein-ligand interaction detected (PLIP)MG.86: 1 residues within 4Å:- Chain B: U.706
No protein-ligand interaction detected (PLIP)MG.87: 3 residues within 4Å:- Chain B: G.406, A.427, A.428
No protein-ligand interaction detected (PLIP)MG.88: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.89: 2 residues within 4Å:- Chain B: G.1501
- Chain X: R.37
No protein-ligand interaction detected (PLIP)MG.90: 3 residues within 4Å:- Chain B: G.940, A.941
- Chain P: R.113
No protein-ligand interaction detected (PLIP)MG.91: 3 residues within 4Å:- Chain B: A.302, A.303, U.304
No protein-ligand interaction detected (PLIP)MG.92: 3 residues within 4Å:- Chain B: U.786
- Chain Y: G.3, C.4
No protein-ligand interaction detected (PLIP)MG.93: 2 residues within 4Å:- Chain B: U.1040
- Chain Q: K.3
No protein-ligand interaction detected (PLIP)MG.94: 2 residues within 4Å:- Chain B: C.1209, U.1325
No protein-ligand interaction detected (PLIP)MG.95: 3 residues within 4Å:- Chain B: A.1213, U.1275, U.1309
No protein-ligand interaction detected (PLIP)MG.96: 5 residues within 4Å:- Chain B: G.1216, G.1217, C.1218, G.1268, U.1269
No protein-ligand interaction detected (PLIP)MG.97: 1 residues within 4Å:- Chain B: U.1266
No protein-ligand interaction detected (PLIP)MG.98: 1 residues within 4Å:- Chain B: G.320
No protein-ligand interaction detected (PLIP)MG.99: 1 residues within 4Å:- Chain B: C.534
No protein-ligand interaction detected (PLIP)MG.100: 2 residues within 4Å:- Chain B: G.1274, G.1308
No protein-ligand interaction detected (PLIP)MG.101: 2 residues within 4Å:- Chain B: U.1481
- Chain Y: U.5
No protein-ligand interaction detected (PLIP)MG.102: 2 residues within 4Å:- Chain C: C.32
- Chain L: R.132
No protein-ligand interaction detected (PLIP)MG.103: 1 residues within 4Å:- Chain D: U.35
No protein-ligand interaction detected (PLIP)MG.104: 4 residues within 4Å:- Chain B: G.1208, G.1340, U.1341
- Chain L: Y.121
No protein-ligand interaction detected (PLIP)MG.105: 2 residues within 4Å:- Chain B: A.501
- Chain O: Q.126
No protein-ligand interaction detected (PLIP)MG.106: 2 residues within 4Å:- Chain B: U.1298
- Chain P: G.99
No protein-ligand interaction detected (PLIP)MG.108: 4 residues within 4Å:- Chain B: G.251
- Chain T: H.48, L.69, K.73
No protein-ligand interaction detected (PLIP)MG.110: 2 residues within 4Å:- Chain Y: A.7, U.8
No protein-ligand interaction detected (PLIP)- 2 x ZN: ZINC ION(Non-covalent)
ZN.107: 4 residues within 4Å:- Chain Q: C.24, C.27, C.40, C.43
4 PLIP interactions:4 interactions with chain Q- Metal complexes: Q:C.24, Q:C.27, Q:C.40, Q:C.43
ZN.109: 4 residues within 4Å:- Chain U: C.41, C.44, C.79, H.82
4 PLIP interactions:4 interactions with chain U- Metal complexes: U:C.41, U:C.44, U:C.79, U:H.82
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xue, L. et al., Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-11-20
- Peptides
- 30S ribosomal protein S2: E
30S ribosomal protein S3: F
30S ribosomal protein S4: G
30S ribosomal protein S5: H
30S ribosomal protein S6: I
30S ribosomal protein S7: J
30S ribosomal protein S8: K
30S ribosomal protein S9: L
30S ribosomal protein S10: M
30S ribosomal protein S11: N
30S ribosomal protein S12: O
30S ribosomal protein S13: P
30S ribosomal protein S14 type Z: Q
30S ribosomal protein S15: R
30S ribosomal protein S16: S
30S ribosomal protein S17: T
30S ribosomal protein S18: U
30S ribosomal protein S19: V
30S ribosomal protein S20: W
30S ribosomal protein S21: X
50S ribosomal protein L31: Z - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:E
AF
BG
CH
DI
EJ
FK
GL
HM
IN
JO
KP
LQ
MR
NS
OT
PU
QV
RW
SX
TZ
x
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 2 x SPD: SPERMIDINE(Non-covalent)
- 2 x PUT: 1,4-DIAMINOBUTANE(Non-functional Binders)
- 1 x N2P: PENTANE-1,5-DIAMINE(Non-functional Binders)
- 103 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xue, L. et al., Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-11-20
- Peptides
- 30S ribosomal protein S2: E
30S ribosomal protein S3: F
30S ribosomal protein S4: G
30S ribosomal protein S5: H
30S ribosomal protein S6: I
30S ribosomal protein S7: J
30S ribosomal protein S8: K
30S ribosomal protein S9: L
30S ribosomal protein S10: M
30S ribosomal protein S11: N
30S ribosomal protein S12: O
30S ribosomal protein S13: P
30S ribosomal protein S14 type Z: Q
30S ribosomal protein S15: R
30S ribosomal protein S16: S
30S ribosomal protein S17: T
30S ribosomal protein S18: U
30S ribosomal protein S19: V
30S ribosomal protein S20: W
30S ribosomal protein S21: X
50S ribosomal protein L31: Z - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:E
AF
BG
CH
DI
EJ
FK
GL
HM
IN
JO
KP
LQ
MR
NS
OT
PU
QV
RW
SX
TZ
x