SMTL ID : 8p6q.1 (1 other biounit)

Racemic structure of TNFR1 cysteine-rich domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.29, A:K.29 Salt bridges: A:K.29 SO4.2: 4 residues within 4Å: Chain A: C.5, R.6, K.7, E.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.7, A:E.8 Water bridges: A:R.6, A:R.6 Salt bridges: A:R.6 SO4.3: 1 residues within 4Å: Chain A: K.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.4 SO4.4: 4 residues within 4Å: Chain A: G.26, C.27, R.28, R.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.27 Water bridges: A:R.33 Salt bridges: A:R.33 SO4.5: 4 residues within 4Å: Chain A: C.2, S.3, K.4, R.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.4 Water bridges: A:R.6 Salt bridges: A:R.6 SO4.6: 3 residues within 4Å: Chain A: I.14, S.15, S.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.16, A:S.16 SO4.7: 3 residues within 4Å: Chain A: T.18, D.20, R.21 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.18 Water bridges: A:R.21 SO4.8: 3 residues within 4Å: Chain A: D.20, R.21, D.22 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.20, A:D.22 Salt bridges: A:R.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lander, A.J. et al., Deciphering the Synthetic and Refolding Strategy of a Cysteine-Rich Domain in the Tumor Necrosis Factor Receptor (TNF-R) for Racemic Crystallography Analysis and d-Peptide Ligand Discovery. Acs Bio Med Chem Au (2024)

Release Date

2024-01-24

Peptides

Tumor necrosis factor-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tumor necrosis factor-binding protein 1

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