SMTL ID : 8p6z.1

Cryo-EM structure of CAK in complex with inhibitor ICEC0510-R

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x X4L: N7-(phenylmethyl)-3-propan-2-yl-N5-[(3R)-pyrrolidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine(Non-covalent)

X4L.1: 15 residues within 4Å: Chain C: L.21, G.22, E.23, V.29, A.42, K.44, I.78, F.94, D.95, F.96, M.97, E.98, T.99, D.100, L.147 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:I.78, C:F.94, C:F.94, C:D.100 Hydrogen bonds: C:L.21, C:M.97, C:M.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cushing, V.I. et al., High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design. Nat Commun (2024)

Release Date

2024-03-20

Peptides

CDK-activating kinase assembly factor MAT1: A
Cyclin-H: B
Cyclin-dependent kinase 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

CDK-activating kinase assembly factor MAT1

Cyclin-H

Cyclin-dependent kinase 7

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