SMTL ID : 8p7l.1

Cryo-EM structure of CDK7 subunit of CAK in complex with inhibitor LDC4297

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x WD9: 2-[(3S)-piperidin-3-yl]oxy-8-propan-2-yl-N-[(2-pyrazol-1-ylphenyl)methyl]pyrazolo[1,5-a][1,3,5]triazin-4-amine(Non-covalent)

WD9.1: 14 residues within 4Å: Chain B: L.51, G.52, V.59, A.72, K.74, F.124, D.125, F.126, M.127, E.128, T.129, D.130, L.177, A.187 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.51, B:A.72, B:F.124, B:D.130, B:A.187 Hydrogen bonds: B:G.52, B:M.127, B:M.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cushing, V.I. et al., High-resolution cryo-EM of the human CDK-activating kinase for structure-based drug design. Nat Commun (2024)

Release Date

2024-03-20

Peptides

CDK-activating kinase assembly factor MAT1: A
Cyclin-dependent kinase 7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
J

CDK-activating kinase assembly factor MAT1

Cyclin-dependent kinase 7

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