- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
FMT.2: 10 residues within 4Å:- Chain A: H.22, H.24, V.68, W.98, K.136, H.168, H.197
- Ligands: ZN.3, ZN.4, GB.7
1 PLIP interactions:1 interactions with chain A- Water bridges: A:K.136
FMT.11: 10 residues within 4Å:- Chain B: H.22, H.24, V.68, W.98, K.136, H.168, H.197
- Ligands: ZN.12, ZN.13, GB.16
1 PLIP interactions:1 interactions with chain B- Water bridges: B:K.136
- 4 x ZN: ZINC ION(Non-covalent)
ZN.3: 7 residues within 4Å:- Chain A: H.22, H.24, V.68, D.268
- Ligands: FMT.2, ZN.4, GB.7
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.22, A:H.24, A:D.268
ZN.4: 6 residues within 4Å:- Chain A: W.98, H.168, H.197
- Ligands: FMT.2, ZN.3, GB.7
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:H.168, A:H.197
ZN.12: 7 residues within 4Å:- Chain B: H.22, H.24, V.68, D.268
- Ligands: FMT.11, ZN.13, GB.16
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.22, B:H.24, B:D.268
ZN.13: 6 residues within 4Å:- Chain B: W.98, H.168, H.197
- Ligands: FMT.11, ZN.12, GB.16
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:H.168, B:H.197
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: S.172, T.201, D.202, D.203
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.201, A:D.202, A:D.202, A:D.203
SO4.6: 3 residues within 4Å:- Chain A: W.244, Q.245, R.298
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.245
- Salt bridges: A:R.298
SO4.14: 4 residues within 4Å:- Chain B: S.172, T.201, D.202, D.203
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.202, B:D.202, B:D.202, B:D.203
SO4.15: 3 residues within 4Å:- Chain B: W.244, Q.245, R.298
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.245
- Salt bridges: B:R.298
- 2 x GB: METHYLPHOSPHONIC ACID ESTER GROUP(Non-covalent)
GB.7: 9 residues within 4Å:- Chain A: H.22, H.24, W.98, H.168, H.197, D.268
- Ligands: FMT.2, ZN.3, ZN.4
No protein-ligand interaction detected (PLIP)GB.16: 9 residues within 4Å:- Chain B: H.22, H.24, W.98, H.168, H.197, D.268
- Ligands: FMT.11, ZN.12, ZN.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.168, B:H.197
- Water bridges: B:D.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dym, O. et al., The impact of molecular variants, crystallization conditions and the space group on ligand-protein complexes: a case study on bacterial phosphotriesterase. Acta Crystallogr D Struct Biol (2023)
- Release Date
- 2023-10-25
- Peptides
- Parathion hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GB: METHYLPHOSPHONIC ACID ESTER GROUP(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dym, O. et al., The impact of molecular variants, crystallization conditions and the space group on ligand-protein complexes: a case study on bacterial phosphotriesterase. Acta Crystallogr D Struct Biol (2023)
- Release Date
- 2023-10-25
- Peptides
- Parathion hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A