SMTL ID : 8p7n.2 (1 other biounit)

The impact of molecular variants, crystallization conditions and space group on structure-ligand complexes: A case study on Bacterial Phosphotriesterase Variants and complexes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 9 residues within 4Å: Chain A: H.22, H.24, V.68, W.98, K.136, H.168, H.197 Ligands: ZN.2, ZN.3 No protein-ligand interaction detected (PLIP) FMT.4: 8 residues within 4Å: Chain B: H.22, H.24, W.98, K.136, H.168, H.197 Ligands: ZN.5, ZN.6 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.22, H.24, D.268 Ligands: FMT.1, ZN.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.22, A:H.24, A:D.268 ZN.3: 5 residues within 4Å: Chain A: W.98, H.168, H.197 Ligands: FMT.1, ZN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.168, A:H.197 ZN.5: 6 residues within 4Å: Chain B: H.22, H.24, H.197, D.268 Ligands: FMT.4, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.22, B:H.24, B:D.268, B:D.268 ZN.6: 6 residues within 4Å: Chain B: W.98, K.136, H.168, H.197 Ligands: FMT.4, ZN.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.168, B:H.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dym, O. et al., The impact of molecular variants, crystallization conditions and the space group on ligand-protein complexes: a case study on bacterial phosphotriesterase. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-10-25

Peptides

Parathion hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Parathion hydrolase

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