SMTL ID : 8p82.1

Cryo-EM structure of dimeric UBR5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1211, C.1240, C.1243, C.1264 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1211, A:C.1240, A:C.1243, A:C.1264 ZN.2: 5 residues within 4Å: Chain A: C.1243, C.1247, C.1266, C.1272, T.1274 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1243, A:C.1247, A:C.1266, A:C.1272 ZN.3: 4 residues within 4Å: Chain A: C.1228, C.1231, H.1248, H.1251 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1228, A:C.1231, A:H.1248, A:H.1251 ZN.4: 4 residues within 4Å: Chain B: C.1211, C.1240, C.1243, C.1264 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1211, B:C.1240, B:C.1243, B:C.1264 ZN.5: 5 residues within 4Å: Chain B: C.1243, C.1247, C.1266, C.1272, T.1274 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1243, B:C.1247, B:C.1266, B:C.1272 ZN.6: 4 residues within 4Å: Chain B: C.1228, C.1231, H.1248, H.1251 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1228, B:C.1231, B:H.1248, B:H.1251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsai, J.M. et al., UBR5 forms ligand-dependent complexes on chromatin to regulate nuclear hormone receptor stability. Mol.Cell (2023)

Release Date

2023-06-14

Peptides

E3 ubiquitin-protein ligase UBR5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase UBR5

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