SMTL ID : 8p84.1

X-ray structure of Thermoanaerobacterales bacterium monoamine oxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 36 residues within 4Å: Chain A: V.32, G.33, A.34, G.35, F.36, A.37, L.55, E.56, A.57, R.58, G.62, G.63, R.64, T.65, L.77, G.78, G.79, Q.80, W.81, P.256, V.257, A.284, V.285, P.286, L.289, K.317, W.406, W.411, C.415, Y.416, G.443, T.444, G.452, Y.453, I.454, A.457 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:K.317, A:W.406 Hydrogen bonds: A:A.34, A:G.35, A:A.37, A:A.57, A:R.58, A:R.64, A:G.79, A:Q.80, A:W.81, A:W.81, A:V.257, A:V.257, A:T.444, A:G.452, A:I.454 Water bridges: A:F.36, A:F.36, A:G.38, A:E.56, A:G.63, A:R.64, A:R.64, A:R.64, A:Q.86, A:D.455 Salt bridges: A:R.64, A:R.64 pi-Stacking: A:Y.416 FAD.4: 36 residues within 4Å: Chain B: V.32, G.33, A.34, G.35, F.36, A.37, L.55, E.56, A.57, R.58, G.62, G.63, R.64, T.65, L.77, G.78, G.79, Q.80, W.81, P.256, V.257, A.284, V.285, P.286, L.289, K.317, W.406, W.411, C.415, Y.416, G.443, T.444, G.452, Y.453, I.454, A.457 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:K.317, B:W.406 Hydrogen bonds: B:A.34, B:G.35, B:A.37, B:A.57, B:R.58, B:R.64, B:G.79, B:Q.80, B:W.81, B:W.81, B:V.257, B:V.257, B:T.444, B:T.444, B:G.452, B:I.454 Water bridges: B:F.36, B:F.36, B:G.38, B:E.56, B:G.63, B:R.64, B:R.64, B:Q.86, B:D.455 Salt bridges: B:R.64, B:R.64 pi-Stacking: B:W.411, B:Y.416

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.60, V.61, E.240, L.251 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.61, A:E.240, A:E.240

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: T.105 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:T.105, H2O.4, H2O.6, H2O.6, H2O.8, H2O.11 MG.5: 1 residues within 4Å: Chain B: T.105 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:T.105, H2O.15, H2O.18, H2O.20, H2O.22, H2O.24 MG.6: 2 residues within 4Å: Chain B: E.148, H.211 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.148, B:H.211, H2O.19, H2O.19, H2O.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santema, L.L. et al., Discovery and structural characterization of a thermostable bacterial monoamine oxidase. Febs J. (2024)

Release Date

2023-10-18

Peptides

Monoamine oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Monoamine oxidase