SMTL ID : 8p8c.1

HUMAN CD38 ECTODOMAIN BOUND TO COMPOUND 9-ADPR ADDUCT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x X5T: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[4-[[4-(2-methoxyethoxy)cyclohexyl]amino]-1-methyl-2-oxidanylidene-quinolin-6-yl]pyrazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

X5T.1: 19 residues within 4Å: Chain A: L.80, W.81, S.82, R.83, L.101, W.132, V.141, S.142, W.145, K.146, S.149, F.152, D.175, S.176, T.177, F.178, S.180, V.181, E.182 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.145, A:W.145 Hydrogen bonds: A:W.81, A:W.81, A:R.83, A:T.177, A:T.177, A:T.177, A:F.178 Water bridges: A:R.83, A:R.83, A:R.83, A:L.101 Salt bridges: A:R.83 pi-Stacking: A:W.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Doyle, K. et al., A Covalent Binding Mode of a Pyrazole-Based CD38 Inhibitor. Helv.Chim.Acta (2023)

Release Date

2023-07-26

Peptides

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1

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