SMTL ID : 8p8f.1

Crystal structure of the lipase SpL from Sphingomonas sp. HXN-200 in complex with N-benzyl-picolinamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x XBW: ~{N}-(phenylmethyl)pyridine-2-carboxamide(Covalent)

XBW.1: 17 residues within 4Å: Chain A: M.54, G.105, G.106, G.107, W.108, D.172, S.173, A.174, Y.202, A.204, L.222, L.223, M.228, F.231, L.267, H.295, G.296 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.223, A:F.231 Hydrogen bonds: A:G.106, A:G.107, A:A.174, A:H.295 XBW.2: 17 residues within 4Å: Chain B: M.54, G.105, G.106, G.107, W.108, I.110, S.173, A.174, Y.202, A.204, L.222, L.223, M.228, F.231, L.267, H.295, G.296 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.223, B:F.231 Hydrogen bonds: B:G.106, B:G.107, B:S.173, B:A.174, B:H.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zukic, E. et al., Biocatalytic Heteroaromatic Amide Formation in Water Enabled by a Catalytic Tetrad and Two Access Tunnels. Acs Catalysis (2024)

Release Date

2024-06-12

Peptides

Lipase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lipase

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