SMTL ID : 8p8q.1

Recombinant Ym1 crystal structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 8 residues within 4Å: Chain A: Y.25, F.56, D.136, Q.138, T.181, M.208, Y.210, W.358 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.25, A:W.358 Hydrogen bonds: A:Q.138, A:Y.210, A:Y.210

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: L.212, H.213, D.214, G.221, E.222, P.225, D.232, S.236, L.239, Q.320 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.213, A:E.222, A:S.229, A:L.239, A:L.239 Water bridges: A:D.214, A:D.232, A:Q.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heyndrickx, I. et al., Ym1 protein crystals promote type 2 immunity. Elife (2024)

Release Date

2024-01-17

Peptides

Chitinase-like protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase-like protein 3