SMTL ID : 8p8s.1

Recombinant Ym2 crystal structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.17 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 10 residues within 4Å: Chain A: Y.49, F.80, G.120, W.121, D.160, Q.162, T.205, M.232, Y.234, W.382 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.162, A:Y.234 Water bridges: A:W.121 EDO.2: 9 residues within 4Å: Chain A: S.52, W.53, K.55, D.56, Y.78, S.92, Q.94, D.95 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.55, A:D.56, A:D.95 Water bridges: A:D.56 EDO.3: 9 residues within 4Å: Chain A: S.52, W.53, Y.78, A.79, F.80, L.91, S.92, D.95 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.52, A:F.80 Water bridges: A:S.52, A:L.91 EDO.4: 7 residues within 4Å: Chain A: T.51, W.53, E.319, L.322, W.382, P.383, M.386 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.53 Water bridges: A:E.319, A:W.382 EDO.5: 4 residues within 4Å: Chain A: I.294, P.312, N.353, E.354 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.353 EDO.6: 2 residues within 4Å: Chain A: K.84, N.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heyndrickx, I. et al., Ym1 protein crystals promote type 2 immunity. Elife (2024)

Release Date

2024-01-17

Peptides

Chitinase-like protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase-like protein 4