SMTL ID : 8p9v.1 (1 other biounit)

Crystal Structure of Two-Domain Laccase mutant M199G/R240H/D268N from Streptomyces griseoflavus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

2 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.1: 11 residues within 4Å: Chain A: H.64, H.66, H.118, H.120 Chain B: H.196, H.198, H.249, H.251 Ligands: CU.6, CU.8, CU.9 No protein-ligand interaction detected (PLIP) OXY.2: 10 residues within 4Å: Chain A: H.196, H.198, H.249, H.251 Chain C: H.64, H.118, H.120 Ligands: CU.4, CU.5, CU.12 No protein-ligand interaction detected (PLIP)

12 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.193, C.250, H.255, M.260 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.193, A:C.250, A:H.255 CU.4: 4 residues within 4Å: Chain A: H.198, H.249 Chain C: H.120 Ligands: OXY.2 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Metal complexes: C:H.120, A:H.198, A:H.249 CU.5: 7 residues within 4Å: Chain A: H.196, H.198 Chain C: H.64, V.65, H.66 Ligands: OXY.2, CU.12 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Metal complexes: A:H.196, C:H.64 CU.6: 6 residues within 4Å: Chain A: H.64, H.66, H.118 Chain B: H.251 Ligands: OXY.1, CU.9 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.66, A:H.118, B:H.251 CU.7: 4 residues within 4Å: Chain B: H.193, C.250, H.255, M.260 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.193, B:C.250, B:H.255 CU.8: 4 residues within 4Å: Chain A: H.120 Chain B: H.198, H.249 Ligands: OXY.1 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.198, B:H.249, A:H.120 CU.9: 6 residues within 4Å: Chain A: H.64, H.66 Chain B: H.196, H.198 Ligands: OXY.1, CU.6 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.64, B:H.196 CU.10: 6 residues within 4Å: Chain B: H.64, H.66, H.118 Chain C: H.196, H.251 Ligands: CU.11 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.251, B:H.66, B:H.118, H2O.3 CU.11: 5 residues within 4Å: Chain B: H.64, H.66 Chain C: H.196, H.198 Ligands: CU.10 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Metal complexes: B:H.64, C:H.196 CU.12: 5 residues within 4Å: Chain A: H.251 Chain C: H.66, H.118 Ligands: OXY.2, CU.5 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Metal complexes: A:H.251, C:H.66, C:H.118 CU.13: 4 residues within 4Å: Chain C: H.193, C.250, H.255, M.260 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.193, C:C.250, C:H.255 CU.14: 3 residues within 4Å: Chain B: H.120 Chain C: H.198, H.249 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:H.198, C:H.249, B:H.120, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolyadenko, I. et al., Structural Insight into the Amino Acid Environment of the Two-Domain Laccase's Trinuclear Copper Cluster. Int J Mol Sci (2023)

Release Date

2024-04-10

Peptides

Two-domain laccase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Two-domain laccase

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