SMTL ID : 8pat.1

Structure of the E.coli DNA polymerase sliding clamp with a covalently bound peptide 3.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x ACE- GLN- ALC- 23P- LEU- PHE: ACE-GLN-ALC-GLX-LEU-PHE(Non-covalent)

ACE-GLN-ALC-23P-LEU-PHE.1: 16 residues within 4Å: Chain A: R.155, T.175, G.177, H.178, R.179, L.180, P.245, N.323, Y.326, V.347, S.349, V.363, M.365, P.366, M.367, R.368 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.175, A:P.245, A:V.363, A:M.365 Hydrogen bonds: A:R.155, A:R.155, A:G.177, A:M.365, A:P.366, A:R.368 Water bridges: A:N.323, A:Y.326 Salt bridges: A:R.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Compain, G. et al., Peptide-Based Covalent Inhibitors Bearing Mild Electrophiles to Target a Conserved His Residue of the Bacterial Sliding Clamp. Jacs Au (2024)

Release Date

2024-03-13

Peptides

Beta sliding clamp: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta sliding clamp