SMTL ID : 8pbz.1

Sub-tomogram average of the Nap adhesion complex from the human pathogen Mycoplasma genitalium at 11 Angstrom.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-SIA.1: 18 residues within 4Å: Chain A: A.181, N.182, P.197, S.198, P.199, N.200, A.201, G.456, S.457, F.458, P.469, Y.470 Chain B: N.634, D.635, P.870, S.871, G.872, S.874 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.182, B:S.871, B:N.634, A:P.197, A:N.200, A:N.200, A:S.457, A:Y.470 Hydrophobic interactions: A:F.458 BGC-GAL-SIA.2: 18 residues within 4Å: Chain C: A.181, N.182, P.197, S.198, P.199, N.200, A.201, G.456, S.457, F.458, P.469, Y.470 Chain D: N.634, D.635, P.870, S.871, G.872, S.874 7 PLIP interactions: 1 interactions with chain D, 6 interactions with chain C Hydrogen bonds: D:S.871, C:N.182, D:N.634, C:P.197, C:N.200, C:N.200, C:S.457, C:Y.470 Hydrophobic interactions: C:F.458

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sprankel, L. et al., Cryo-electron tomography reveals the binding and release states of the major adhesion complex from Mycoplasma genitalium. Plos Pathog. (2023)

Release Date

2023-11-01

Peptides

Mgp-operon protein 3: AC
Adhesin P1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

D
E

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Mgp-operon protein 3

Adhesin P1

Related Entries With Identical Sequence