SMTL ID : 8pc7.1 (1 other biounit)

STRUCTURE OF ESTER-HYDROLASE EH3 FROM THE METAGENOME OF MARINE SEDIMENTS AT MILAZZO HARBOR (SICILY, ITALY) COMPLEXED WITH A DERIVATIVE OF BIPYRIDINE PHOSPHONATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: R.251, P.253, D.314, R.321 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.314, A:R.321 PEG.3: 6 residues within 4Å: Chain B: F.87, A.88, P.89, M.149, N.152, N.153 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.87, B:N.152, B:N.153

2 x ZK8: hexyl-[2-(3-oxidanylpyridin-2-yl)pyridin-3-yl]oxy-phosphinic acid(Covalent)

ZK8.2: 13 residues within 4Å: Chain A: G.130, G.131, G.132, M.134, M.136, Y.143, E.210, S.211, G.212, Y.242, H.340, A.341, M.344 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.210, A:Y.242, A:A.341 Hydrogen bonds: A:G.131, A:G.132, A:G.212 ZK8.4: 11 residues within 4Å: Chain B: G.130, G.131, G.132, M.134, M.136, E.210, S.211, G.212, Y.242, H.340, A.341 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.242, B:Y.242, B:A.341 Hydrogen bonds: B:G.131, B:G.132, B:G.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Lopez, L. et al., Transforming an esterase into an enantioselective catecholase through bioconjugation of a versatile metal-chelating inhibitor. Chem.Commun.(Camb.) (2023)

Release Date

2023-07-19

Peptides

Esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Esterase

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