SMTL ID : 8pdg.1

The phosphatase and C2 domains of SHIP1 with covalent Z2738285202

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x YBP: ~{N}-(8-chloranylquinolin-2-yl)propanamide(Covalent)

YBP.1: 8 residues within 4Å: Chain A: H.110, C.112, F.134, M.135, S.140, G.172, D.173, K.174 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:D.173 Hydrogen bonds: A:K.174 Water bridges: A:G.172, A:G.172, A:K.175 pi-Stacking: A:H.110

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: Y.286, S.360, S.361, H.407, L.409 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.361 DMS.3: 7 residues within 4Å: Chain A: G.138, T.139, T.186, T.319, D.405, Q.406, H.407 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.319 Water bridges: A:T.139 DMS.4: 6 residues within 4Å: Chain A: H.183, H.238, K.284, C.425, T.441, P.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.284, A:C.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., Regulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2. Structure (2024)

Release Date

2023-06-28

Peptides

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

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