SMTL ID : 8pdl.1

10-mer ring of human metapneumovirus (HMPV) N-RNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

10 x C- C- C- C- C- C- C: RNA(Non-covalent)

C-C-C-C-C-C-C.1: 33 residues within 4Å: Chain A: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Chain J: R.186, R.189, V.190, L.243, N.246, Q.250 Ligands: C-C-C-C-C-C-C.2, C-C-C-C-C-C-C.10 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.2: 33 residues within 4Å: Chain A: R.186, R.189, V.190, L.243, N.246, Q.250 Chain B: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.3 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.3: 33 residues within 4Å: Chain B: R.186, R.189, V.190, L.243, N.246, Q.250 Chain C: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.2, C-C-C-C-C-C-C.4 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.4: 33 residues within 4Å: Chain C: R.186, R.189, V.190, L.243, N.246, Q.250 Chain D: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.3, C-C-C-C-C-C-C.5 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.5: 33 residues within 4Å: Chain D: R.186, R.189, V.190, L.243, N.246, Q.250 Chain E: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.4, C-C-C-C-C-C-C.6 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.6: 33 residues within 4Å: Chain E: R.186, R.189, V.190, L.243, N.246, Q.250 Chain F: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.5, C-C-C-C-C-C-C.7 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.7: 33 residues within 4Å: Chain F: R.186, R.189, V.190, L.243, N.246, Q.250 Chain G: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.6, C-C-C-C-C-C-C.8 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.8: 33 residues within 4Å: Chain G: R.186, R.189, V.190, L.243, N.246, Q.250 Chain H: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.7, C-C-C-C-C-C-C.9 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.9: 33 residues within 4Å: Chain H: R.186, R.189, V.190, L.243, N.246, Q.250 Chain I: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.8, C-C-C-C-C-C-C.10 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.10: 33 residues within 4Å: Chain I: R.186, R.189, V.190, L.243, N.246, Q.250 Chain J: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, M.258, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340, R.341 Ligands: C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.9 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitehead, J.D. et al., Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus. Nat Commun (2023)

Release Date

2023-12-06

Peptides

Nucleoprotein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

Nucleoprotein

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