SMTL ID : 8pdn.1

Spiral of assembled human metapneumovirus (HMPV) N-RNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

12 x C- C- C- C- C- C- C: RNA(Non-covalent)

C-C-C-C-C-C-C.1: 24 residues within 4Å: Chain A: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.2 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.2: 34 residues within 4Å: Chain A: R.186, A.187, R.189, V.190, K.239, S.242, L.243, N.246 Chain B: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.1, C-C-C-C-C-C-C.4, C-C-C-C-C-C-C.4 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.3: 32 residues within 4Å: Chain C: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Chain D: R.186, R.189, V.190, S.242, L.243, N.246 Ligands: C-C-C-C-C-C-C.4, C-C-C-C-C-C-C.5, C-C-C-C-C-C-C.5 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.4: 32 residues within 4Å: Chain B: R.186, R.189, V.190, S.242, L.243, N.246, Q.250 Chain D: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.2, C-C-C-C-C-C-C.3 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.5: 35 residues within 4Å: Chain C: L.167, R.186, R.189, V.190, S.242, L.243, N.246, I.247, Q.250 Chain E: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.3, C-C-C-C-C-C-C.6, C-C-C-C-C-C-C.6 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.6: 33 residues within 4Å: Chain E: R.186, R.189, V.190, S.242, L.243, N.246, Q.250 Chain F: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.5, C-C-C-C-C-C-C.7, C-C-C-C-C-C-C.7 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.7: 33 residues within 4Å: Chain F: R.186, R.189, V.190, S.242, L.243, N.246, Q.250 Chain G: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.6, C-C-C-C-C-C-C.8, C-C-C-C-C-C-C.8 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.8: 32 residues within 4Å: Chain G: R.186, R.189, V.190, L.243, N.246, Q.250 Chain H: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.7, C-C-C-C-C-C-C.9, C-C-C-C-C-C-C.9 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.9: 32 residues within 4Å: Chain H: R.186, R.189, V.190, L.243, N.246, Q.250 Chain I: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.8, C-C-C-C-C-C-C.10, C-C-C-C-C-C-C.10 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.10: 32 residues within 4Å: Chain I: R.186, R.189, V.190, L.243, N.246, Q.250 Chain J: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.9, C-C-C-C-C-C-C.11, C-C-C-C-C-C-C.11 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.11: 33 residues within 4Å: Chain J: R.186, R.189, V.190, L.243, N.246, I.247, Q.250 Chain K: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.10, C-C-C-C-C-C-C.12, C-C-C-C-C-C-C.12 Protein-ligand interaction information (PLIP) not available C-C-C-C-C-C-C.12: 30 residues within 4Å: Chain K: R.186, R.189, V.190, L.243, N.246, Q.250 Chain L: K.171, A.173, S.174, V.178, T.182, R.185, R.186, R.189, Q.250, G.255, Q.256, T.257, W.261, H.303, S.314, A.316, I.334, I.335, G.336, M.337, Y.338, R.339, G.340 Ligands: C-C-C-C-C-C-C.11 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitehead, J.D. et al., Structure of the N-RNA/P interface indicates mode of L/P recruitment to the nucleocapsid of human metapneumovirus. Nat Commun (2023)

Release Date

2023-12-06

Peptides

Nucleoprotein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Nucleoprotein

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