SMTL ID : 8pe1.2 (1 other biounit)

Crystal structure of Gel4 in complex with Nanobody 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

7 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.1: 3 residues within 4Å: Chain A: T.314, G.315 Ligands: MAN.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.315 Water bridges: A:T.314, A:G.315 MAN.3: 6 residues within 4Å: Chain A: Q.64, S.302, S.305, V.306, Q.309 Ligands: MAN.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.64, A:S.302 Water bridges: A:Q.64 MAN.5: 3 residues within 4Å: Chain A: S.302, Y.303 Ligands: MAN.3 No protein-ligand interaction detected (PLIP) MAN.6: 5 residues within 4Å: Chain A: E.7, S.16, G.19, S.318, A.319 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.7, A:S.16, A:G.19 MAN.7: 3 residues within 4Å: Chain A: T.330, C.331, P.332 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.331 MAN.9: 5 residues within 4Å: Chain A: P.264, N.267, T.312, A.313 Ligands: MAN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.267 Water bridges: A:T.314 MAN.10: 3 residues within 4Å: Chain A: V.316, N.317, S.320 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.317

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: Y.15, N.17, N.18, T.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.17, A:T.20 NAG.4: 2 residues within 4Å: Chain A: D.146, N.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.148 Water bridges: A:N.148 NAG.8: 6 residues within 4Å: Chain A: N.392, T.394, S.395 Chain B: D.105, G.106, S.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.392, A:S.395 Water bridges: A:S.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Redrado-Hernandez, S. et al., Broad Protection against Invasive Fungal Disease from a Nanobody Targeting the Active Site of Fungal beta-1,3-Glucanosyltransferases. Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2024-06-19

Peptides

1,3-beta-glucanosyltransferase: A
Nanobody 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

1,3-beta-glucanosyltransferase

Nanobody 4

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