SMTL ID : 8peh.2 (2 other biounits)

Crystal structure of Lotus japonicus SYMRK kinase domain D738N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.101, R.109, K.110 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.101, A:R.109, A:K.110 SO4.2: 7 residues within 4Å: Chain A: G.26, G.27, F.28, K.45, N.161, F.162, G.163 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.27, A:F.28, A:N.161, A:G.163 Water bridges: A:G.26, A:G.29, A:F.162 Salt bridges: A:K.45 SO4.3: 3 residues within 4Å: Chain A: Q.99, K.145, S.147 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.99, A:S.147 Water bridges: A:Y.186 Salt bridges: A:K.145

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: F.92, M.93, S.94, D.152, H.153 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.92, A:S.94, A:H.153, A:H.153 EDO.5: 3 residues within 4Å: Chain A: S.281, V.283, A.284 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.281 EDO.6: 2 residues within 4Å: Chain A: P.225, R.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.226 EDO.7: 3 residues within 4Å: Chain A: R.287, E.290, D.291 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.287, A:E.290 EDO.8: 1 residues within 4Å: Chain A: I.222 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abel, N.B. et al., Phosphorylation of the alpha-I motif in SYMRK drives root nodule organogenesis. Proc.Natl.Acad.Sci.USA (2024)

Release Date

2024-02-28

Peptides

Receptor-like kinase SYMRK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Receptor-like kinase SYMRK

Related Entries With Identical Sequence