SMTL ID : 8pem.1

Zika Methyltransferase in complex with AT-9010 and SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x AT9: [[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Non-covalent)

AT9.1: 11 residues within 4Å: Chain A: K.13, L.16, N.17, M.19, F.24, K.28, S.150, S.151, S.152, S.215 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:M.19, A:M.19, A:M.19, A:S.215 Water bridges: A:S.150 Salt bridges: A:K.28, A:K.28 pi-Stacking: A:F.24, A:F.24 Halogen bonds: A:K.13

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 18 residues within 4Å: Chain A: S.56, G.58, G.81, C.82, G.83, G.85, G.86, W.87, T.104, K.105, H.110, E.111, V.130, D.131, V.132, F.133, D.146, I.147 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.56, A:G.85, A:G.86, A:W.87, A:W.87, A:T.104, A:K.105, A:K.105, A:E.111, A:E.111, A:E.111, A:D.131, A:V.132, A:D.146 Water bridges: A:R.84, A:G.148

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: T.7, L.8, M.192, S.234 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.8, A:S.234 Water bridges: A:G.9

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: S.150 Ligands: AT9.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krejcova, K. et al., Crystal structure of Zika Methyltransferase in complex with AT-9010 and SAH. to be published

Release Date

2024-06-26

Peptides

RNA-directed RNA polymerase NS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase NS5