SMTL ID : 8pf0.1

Diubiquitin-derived artificial binding protein (Affilin) variant Af1 specific to oncofetal fibronectin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 2 residues within 4Å: Chain A: D.100 Ligands: IMD.6 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.100, H2O.1 CU.2: 2 residues within 4Å: Chain A: D.111 Ligands: IMD.5 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.111, H2O.1, H2O.2 CU.3: 2 residues within 4Å: Chain A: H.85, H.147 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.85, A:H.147, H2O.1 CU.4: 2 residues within 4Å: Chain A: H.6, H.68 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.6, A:H.68, H2O.1

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 3 residues within 4Å: Chain A: Q.110, D.111 Ligands: CU.2 No protein-ligand interaction detected (PLIP) IMD.6: 4 residues within 4Å: Chain A: E.97, S.99, D.100 Ligands: CU.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katzschmann, A. et al., Ubiquitin-derived artificial binding proteins targeting oncofetal fibronectin reveal scaffold plasticity by beta-strand slippage. Commun Biol (2024)

Release Date

2024-06-26

Peptides

Affilin variant Af1 (77405): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Affilin variant Af1 (77405)