SMTL ID : 8pfe.2 (1 other biounit)

Crystal Structure of an Hexavariant of the b1 Domain of Human Neuropilin-1 in Complex with the KDKPPR Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x PRO- PRO- ARG: LYS-ASP-LYS-PRO-PRO-ARG(Non-covalent)

PRO-PRO-ARG.1: 12 residues within 4Å: Chain A: Y.50, W.54, T.69, D.73, S.99, E.101, T.102, K.104, Y.106, G.167, I.168, S.169 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.50, A:W.54 Hydrogen bonds: A:Y.50, A:Y.50, A:S.99, A:T.102, A:Y.106, A:I.168, A:I.168 Water bridges: A:W.54, A:S.99, A:I.168 Salt bridges: A:D.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goudiaby, I. et al., New Crystal Form of Human Neuropilin-1 b1 Fragment with Six Electrostatic Mutations Complexed with KDKPPR Peptide Ligand. Molecules (2023)

Release Date

2023-08-02

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Neuropilin-1

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