SMTL ID : 8pfh.1

Crystal structure of the yeast septin complex Shs1-Cdc12-Cdc3-Cdc10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.24 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

4 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 23 residues within 4Å: Chain A: Q.18, S.19, G.20, L.21, G.22, K.23, S.24, T.25, S.38, T.40, K.158, S.159, D.160, V.212, V.213, G.214, R.229 Chain B: T.182, G.183, H.184, I.212, L.213, E.217 16 PLIP interactions: 13 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.20, A:G.22, A:K.23, A:S.24, A:S.24, A:T.25, A:T.25, A:K.158, A:K.158, A:G.214, A:R.229, B:I.212 Salt bridges: A:K.23, A:D.160, B:H.184, B:H.184 GDP.2: 20 residues within 4Å: Chain A: N.131, D.160, T.161, L.162, E.166 Chain B: P.49, D.50, G.51, I.52, G.53, K.54, T.55, T.56, K.209, D.211, I.212, I.265, G.266, R.282, Y.284 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.49, B:G.51, B:I.52, B:G.53, B:K.54, B:T.55, B:T.56, B:T.56, B:K.209, B:G.266, B:R.282, B:R.282, B:Y.284, A:T.161 Salt bridges: B:K.54, B:D.211 pi-Cation interactions: B:R.282, B:R.282 GDP.3: 21 residues within 4Å: Chain C: E.58, S.59, G.60, L.61, G.62, K.63, T.64, T.65, R.84, K.196, D.198, T.199, V.262, G.263, R.279, Y.281 Chain D: G.173, H.174, S.202, F.203, E.207 23 PLIP interactions: 19 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:E.58, C:G.60, C:L.61, C:G.62, C:K.63, C:T.64, C:T.64, C:T.64, C:T.65, C:T.65, C:R.84, C:K.196, C:G.263, C:R.279, C:R.279, D:S.202, D:E.207 Salt bridges: C:K.63, C:D.198, D:H.174, D:H.174 pi-Cation interactions: C:R.279, C:R.279 GDP.4: 24 residues within 4Å: Chain C: T.169, G.170, H.171, T.199, L.200, E.204 Chain D: P.12, A.13, G.14, T.15, G.16, K.17, T.18, A.19, H.32, K.33, M.116, R.199, D.201, I.255, I.256, T.257, R.269, Y.271 24 PLIP interactions: 20 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:P.12, D:G.14, D:T.15, D:G.16, D:K.17, D:T.18, D:T.18, D:T.18, D:A.19, D:R.199, D:R.199, D:R.199, D:T.257, D:R.269, D:R.269, C:T.199, C:E.204 Salt bridges: D:K.17, D:H.32, D:K.33, D:D.201, C:H.171, C:H.171 pi-Cation interactions: D:R.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grupp, B. et al., The structure of a tetrameric septin complex reveals a hydrophobic element essential for NC-interface integrity. Commun Biol (2024)

Release Date

2023-12-06

Peptides

CDC10 isoform 1: A
Cell division control protein 3: B
CDC12 isoform 1: C
SHS1 isoform 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CDC10 isoform 1

Cell division control protein 3

CDC12 isoform 1

SHS1 isoform 1