SMTL ID : 8pfl.1

Crystal structure of WRN helicase domain in complex with 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.394, C.421, C.422, C.425 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.394, A:C.421, A:C.422, A:C.425

1 x YH8: 2-[2-(3,6-dihydro-2~{H}-pyran-4-yl)-5-ethyl-7-oxidanylidene-6-[4-(3-oxidanylpyridin-2-yl)carbonylpiperazin-1-yl]-[1,2,4]triazolo[1,5-a]pyrimidin-4-yl]-~{N}-[2-methyl-4-(trifluoromethyl)phenyl]ethanamide

YH8.2: 21 residues within 4Å: Chain A: A.192, R.197, P.209, I.211, C.213, F.216, D.217, R.218, L.223, G.311, M.312, G.313, Y.335, Q.336, I.338, G.339, R.340, R.343, R.396, I.399, L.400 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:A.192, A:I.211, A:F.216, A:R.218, A:R.218, A:M.312, A:Y.335, A:Y.335, A:I.338, A:I.338, A:L.400 Hydrogen bonds: A:R.197, A:R.218, A:G.313, A:Y.335, A:R.340, A:R.343 Water bridges: A:R.197, A:R.197, A:G.311, A:I.314, A:E.404 pi-Cation interactions: A:R.218 Halogen bonds: A:R.218, A:R.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferretti, S. et al., Discovery of WRN inhibitor HRO761 with synthetic lethality in MSI cancers. Nature (2024)

Release Date

2024-04-24

Peptides

Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN

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