SMTL ID : 8pha.1 (1 other biounit)

O(S)-methyltransferase from Pleurotus sapidus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: S.257, L.262, M.263, L.265, T.290, Y.352, S.354, Q.355, N.385 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.262, A:Y.352, A:Y.352, A:S.354, A:Q.355, A:N.385 GOL.4: 4 residues within 4Å: Chain B: F.269, R.381, W.458, E.467 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.381, B:E.467 GOL.5: 9 residues within 4Å: Chain B: S.257, L.262, M.263, L.265, T.290, Y.352, S.354, Q.355, N.385 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.262, B:T.290, B:Y.352, B:S.354, B:Q.355, B:N.385

1 x BGQ: 2-HYDROXY BUTANE-1,4-DIOL(Non-covalent)

BGQ.2: 6 residues within 4Å: Chain A: C.85, A.86, R.417 Chain B: E.82, C.85, R.417 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.82, B:A.86, B:R.417, A:R.417

1 x ORN: L-ornithine(Non-covalent)

ORN.3: 7 residues within 4Å: Chain A: S.390, H.391, S.396, S.439, L.440, E.441 Chain B: S.165 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.391, A:S.396, A:L.440, A:E.441 Water bridges: A:H.391 Salt bridges: A:H.391

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: D.204 Chain B: Q.117, E.193, R.196 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.196 Water bridges: B:S.113, B:Q.117, B:E.193, B:R.196 NA.7: 2 residues within 4Å: Chain A: P.55 Chain B: Q.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brescia, F.F. et al., A Novel O - and S -Methyltransferase from Pleurotus sapidus Is Involved in Flavor Formation. J.Agric.Food Chem. (2024)

Release Date

2024-03-27

Peptides

O-methyltransferase domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

O-methyltransferase domain-containing protein

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