SMTL ID : 8phd.1 (1 other biounit)

Structure of Human Cdc123 bound to domain 3 of eIF2 gamma and ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: I.43, F.122, K.124, W.127, S.128, A.129, R.131, K.188, W.189, C.190, L.192, E.197, R.199, R.213, I.265, D.266, N.268 Ligands: MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:A.129, A:K.188, A:C.190, A:E.197, A:R.213, A:N.268 Water bridges: A:R.131, A:R.162, A:R.199, A:R.199, A:R.199, A:R.199, A:R.199, A:R.199, A:R.213, A:N.268 Salt bridges: A:K.124, A:K.124, A:R.131, A:R.131, A:R.199, A:R.213, A:R.213, A:R.213 pi-Stacking: A:F.122, A:F.122

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.266, N.268 Ligands: ATP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.266, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cardenal Peralta, C. et al., Binding of human Cdc123 to eIF2 gamma. J.Struct.Biol. (2023)

Release Date

2023-08-16

Peptides

Cell division cycle protein 123 homolog: A
Eukaryotic translation initiation factor 2 subunit 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division cycle protein 123 homolog

Eukaryotic translation initiation factor 2 subunit 3

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