SMTL ID : 8phm.1

Oxalate-bound cobalt(II) human carbonic anhydrase II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: H.91, H.93, H.116, T.195 Ligands: OXD.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.116

1 x HGB: 4-(HYDROXYMERCURY)BENZOIC ACID(Non-covalent)

HGB.2: 6 residues within 4Å: Chain A: V.131, Q.132, Q.133, P.134, E.201, C.202 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:P.134 Metal complexes: A:Q.133, A:C.202, H2O.6

1 x OXD: OXALIC ACID(Non-covalent)

OXD.3: 8 residues within 4Å: Chain A: H.91, H.93, H.116, L.194, T.195, T.196, W.205 Ligands: CO.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.195, A:T.196 Water bridges: A:Q.89 Salt bridges: A:H.91, A:H.91, A:H.93, A:H.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gigli, L. et al., Machine Learning-Enhanced Quantum Chemistry-Assisted Refinement of the Active Site Structure of Metalloproteins. Inorg.Chem. (2024)

Release Date

2024-10-23

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonic anhydrase 2