- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 9 residues within 4Å:- Chain A: C.160, T.161, Q.162, K.204, G.205, N.206, H.207, C.208, G.209
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:C.160, A:G.205, A:H.207, A:C.208
- Water bridges: A:C.160
EDO.6: 5 residues within 4Å:- Chain A: Q.39, L.42, K.43, E.218, I.219
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.219
EDO.13: 6 residues within 4Å:- Chain A: Q.78, I.81, S.113, K.114, Y.115
- Ligands: EDO.16
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.115
EDO.16: 4 residues within 4Å:- Chain A: Y.115, T.116, E.117
- Ligands: EDO.13
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.115, A:E.117
EDO.17: 4 residues within 4Å:- Chain A: K.19, D.20, F.30, Y.94
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.20
- Water bridges: A:Y.94
- 4 x CD: CADMIUM ION(Non-covalent)
CD.7: 8 residues within 4Å:- Chain A: Q.21, C.27, H.166, G.167, W.188
- Chain B: X.7, W.10
- Ligands: CL.11
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.27, A:H.166, H2O.3
CD.8: 3 residues within 4Å:- Chain A: H.190
- Ligands: CL.2, CL.3
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.190
CD.9: 6 residues within 4Å:- Chain A: D.141, R.143, H.144, C.160, T.161
- Ligands: CL.1
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.141, A:D.141, A:H.144, H2O.2
CD.10: 2 residues within 4Å:- Chain A: E.17, H.190
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.17, A:E.17, H2O.1
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.12: 3 residues within 4Å:- Chain A: R.10, E.11
- Ligands: PEG.19
No protein-ligand interaction detected (PLIP)ACT.14: 7 residues within 4Å:- Chain A: R.143, N.163, V.164, N.165
- Chain B: H.4, V.8, M.9
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.165
- Salt bridges: A:R.143
- Water bridges: B:M.9
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.15: 5 residues within 4Å:- Chain A: D.20, G.22, S.23, F.148, W.188
No protein-ligand interaction detected (PLIP)PEG.18: 7 residues within 4Å:- Chain A: D.5, K.127, Y.173, D.175, E.180, R.202, N.203
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.127, A:R.202, A:R.202, A:N.203
- Water bridges: A:G.174, A:D.175
PEG.19: 9 residues within 4Å:- Chain A: R.10, V.15, T.16, E.17, V.18, L.47, K.185, Y.197
- Ligands: ACT.12
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.15, A:T.16, A:V.18, A:Y.197
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petruzzella, A. et al., Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins. Nat.Chem.Biol. (2024)
- Release Date
- 2024-06-05
- Peptides
- Cathepsin S: A
NNPI-C10 inhibitor: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x CD: CADMIUM ION(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petruzzella, A. et al., Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins. Nat.Chem.Biol. (2024)
- Release Date
- 2024-06-05
- Peptides
- Cathepsin S: A
NNPI-C10 inhibitor: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B