SMTL ID : 8pji.1

MLLT1 in complex with compound 10a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: V.9, R.10, C.42, I.44, F.47, A.138, G.139 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.10 EDO.2: 2 residues within 4Å: Chain A: R.10, K.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.10, A:R.10, A:K.121

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: E.94, P.95, R.96, K.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.96 Salt bridges: A:E.94

1 x ZJF: ~{N}-cyclopentyl-1-(3-hydroxyphenyl)imidazole-4-carboxamide(Non-covalent)

ZJF.4: 12 residues within 4Å: Chain A: F.28, H.56, S.58, F.59, P.60, E.75, S.76, G.77, Y.78, A.79, G.80, F.81 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.28, A:F.28, A:F.59, A:F.59, A:P.60, A:Y.78, A:A.79, A:F.81 Hydrogen bonds: A:S.58, A:S.58, A:Y.78, A:A.79 Water bridges: A:Y.78 pi-Stacking: A:F.59

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: K.50, R.63, V.65, K.67 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.50, A:R.63, A:K.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raux, B. et al., Discovery of PFI-6, a small-molecule chemical probe for the YEATS domain of MLLT1 and MLLT3. Bioorg.Med.Chem.Lett. (2023)

Release Date

2023-11-22

Peptides

Protein ENL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein ENL

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