SMTL ID : 8pjp.1

Neisseria meningitidis PilE, SB-GATDH variant, bound to the F10 nanobody

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x G3P: SN-GLYCEROL-3-PHOSPHATE(Covalent)

G3P.1: 3 residues within 4Å: Chain A: S.69, A.70, T.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.69, A:A.70

1 x WKE: (2~{R})-~{N}-[(2~{R},3~{S},4~{S},5~{R},6~{R})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide(Covalent)

WKE.2: 12 residues within 4Å: Chain A: Y.50, E.56, W.57, P.58, G.59, S.63 Chain B: S.54, S.55, R.56, G.58, A.59, Y.103 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.55, B:S.55, B:S.55, B:R.56, A:E.56, A:E.56, A:G.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Martinez, D. et al., Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms. Nat Commun (2024)

Release Date

2024-04-03

Peptides

Pilin: A
Nanobody F10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Pilin

Nanobody F10

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