SMTL ID : 8pkn.1

CryoEM structure of catalytic domain of human HMG-CoA reductase with its inhibitor atorvastatin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.26 Å

Oligo State

homo-tetramer

Ligands

4 x 117: 7-[2-(4-FLUORO-PHENYL)-5-ISOPROPYL-3-PHENYL-4-PHENYLCARBAMOYL-PYRROL-1-YL]- 3,5-DIHYDROXY-HEPTANOIC ACID(Non-covalent)

117.1: 20 residues within 4Å: Chain A: R.152, S.223, S.246, N.248, D.252, K.253, K.254 Chain C: E.121, C.123, L.124, S.127, R.130, K.297, A.313, H.314, N.317, L.415, A.418, L.419, H.423 15 PLIP interactions: 8 interactions with chain A, 7 interactions with chain C Hydrophobic interactions: A:D.252, C:H.314, C:L.415, C:A.418, C:L.419 Hydrogen bonds: A:R.152, A:R.152, A:S.246, A:D.252, A:K.253, C:S.127, C:N.317 Salt bridges: A:R.152, A:K.254, C:K.297 117.2: 20 residues within 4Å: Chain B: R.152, S.223, S.246, N.248, D.252, K.253, K.254 Chain D: E.121, C.123, L.124, S.127, R.130, K.297, A.313, H.314, N.317, L.415, A.418, L.419, H.423 15 PLIP interactions: 7 interactions with chain D, 8 interactions with chain B Hydrophobic interactions: D:H.314, D:L.415, D:A.418, D:L.419, B:D.252 Hydrogen bonds: D:S.127, D:N.317, B:R.152, B:R.152, B:S.246, B:D.252, B:K.253 Salt bridges: D:K.297, B:R.152, B:K.254 117.3: 20 residues within 4Å: Chain A: E.121, C.123, L.124, S.127, R.130, K.297, A.313, H.314, N.317, L.415, A.418, L.419, H.423 Chain C: R.152, S.223, S.246, N.248, D.252, K.253, K.254 16 PLIP interactions: 9 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:D.252, A:H.314, A:L.415, A:A.418, A:L.419 Hydrogen bonds: C:R.152, C:R.152, C:S.246, C:D.252, C:D.252, C:K.253, A:S.127, A:N.317 Salt bridges: C:R.152, C:K.254, A:K.297 117.4: 20 residues within 4Å: Chain B: E.121, C.123, L.124, S.127, R.130, K.297, A.313, H.314, N.317, L.415, A.418, L.419, H.423 Chain D: R.152, S.223, S.246, N.248, D.252, K.253, K.254 16 PLIP interactions: 9 interactions with chain D, 7 interactions with chain B Hydrophobic interactions: D:D.252, B:H.314, B:L.415, B:A.418, B:L.419 Hydrogen bonds: D:R.152, D:R.152, D:S.246, D:D.252, D:D.252, D:K.253, B:S.127, B:N.317 Salt bridges: D:R.152, D:K.254, B:K.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manikandan, K. et al., Cryo-EM structures of apo and atorvastatin-bound human 3-hydroxy-3-methylglutaryl-coenzyme A reductase. Acta Crystallogr.,Sect.F (2025)

Release Date

2025-01-15

Peptides

3-hydroxy-3-methylglutaryl-coenzyme A reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

3-hydroxy-3-methylglutaryl-coenzyme A reductase

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