SMTL ID : 8plg.1

Thioredoxin glutathione reductase of Schistosoma mansoni fragment screen hit 17.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: I.114, G.115, G.116, G.117, S.118, G.119, L.137, D.138, Y.139, V.140, G.153, T.154, C.155, V.158, G.159, C.160, K.163, A.227, K.228, G.229, A.257, T.258, G.259, Y.297, V.298, R.394, V.401, G.433, D.434, Q.441, L.442, T.443, P.444 Chain B: H.572, P.573 28 PLIP interactions: 25 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.298 Hydrogen bonds: A:G.116, A:S.118, A:S.118, A:G.119, A:D.138, A:Y.139, A:T.154, A:T.154, A:T.154, A:C.155, A:K.163, A:G.229, A:G.229, A:Y.297, A:D.434, A:Q.441, A:T.443, A:T.443, B:H.572 Water bridges: A:G.117, A:G.120, A:G.259, A:I.435, A:A.446, B:H.572, B:H.572 pi-Stacking: A:Y.297 FAD.3: 35 residues within 4Å: Chain A: H.572, P.573 Chain B: I.114, G.115, G.116, G.117, S.118, G.119, L.137, D.138, Y.139, V.140, G.153, T.154, C.155, V.158, G.159, C.160, K.163, A.227, K.228, G.229, A.257, T.258, G.259, Y.297, V.298, R.394, V.401, G.433, D.434, Q.441, L.442, T.443, P.444 26 PLIP interactions: 23 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.298 Hydrogen bonds: B:G.116, B:S.118, B:S.118, B:G.119, B:Y.139, B:T.154, B:T.154, B:C.155, B:K.163, B:G.229, B:G.229, B:D.434, B:Q.441, B:T.443, B:T.443, B:T.443, A:H.572 Water bridges: B:G.117, B:G.120, B:G.259, B:I.435, B:A.446, A:H.572, A:H.572 pi-Stacking: B:Y.297

2 x YI6: 2-(4-ethoxyphenyl)ethanoic acid(Non-covalent)

YI6.2: 5 residues within 4Å: Chain A: E.404, G.407, V.408, K.409, T.425 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.409, A:K.409, A:K.409 Salt bridges: A:K.409 YI6.4: 5 residues within 4Å: Chain B: E.404, G.407, V.408, K.409, T.425 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.409, B:K.409, B:K.409 Salt bridges: B:K.409

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Souza Neto, L.R. et al., Fragment library screening by X-ray crystallography and binding site analysis on thioredoxin glutathione reductase of Schistosoma mansoni. Sci Rep (2024)

Release Date

2024-01-31

Peptides

Thioredoxin glutathione reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Thioredoxin glutathione reductase

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