SMTL ID : 8pos.1 (1 other biounit)

Crystal structure of wolbachia leucyl-tRNA synthetase editing domain bound to cmpd9-AMP adduct

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x 7RZ: [(1R,3'S,5S,6R,8R)-3'-(aminomethyl)-8-(6-aminopurin-9-yl)-4'-bromanyl-7'-[3-[methyl-(phenylmethyl)amino]propoxy]spiro[2,4,7-trioxa-3$l^{4}-borabicyclo[3.3.0]octane-3,1'-3H-2,1$l^{4}-benzoxaborole]-6-yl]methyl dihydrogen phosphate(Non-covalent)

7RZ.1: 16 residues within 4Å: Chain A: S.6, F.25, T.26, T.27, C.28, T.31, F.96, V.97, L.98, Y.101, G.104, I.106, F.107, C.109, D.113, D.116 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.98, A:Y.101 Hydrogen bonds: A:S.6, A:T.26, A:T.27, A:T.27, A:L.98, A:L.98, A:G.104, A:D.116 Water bridges: A:E.103 Salt bridges: A:D.113

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: V.16, G.17, L.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.17, A:L.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoffmann, G. et al., Targeting a microbiota Wolbachian aminoacyl-tRNA synthetase to block its pathogenic host. Sci Adv (2024)

Release Date

2024-06-12

Peptides

Leucine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine--tRNA ligase

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