SMTL ID : 8pqh.1

PDGFRA T674I mutant kinase domain in complex with avapritinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 9JI: (1~{S})-1-(4-fluorophenyl)-1-[2-[4-[6-(1-methylpyrazol-4-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]piperazin-1-yl]pyrimidin-5-yl]ethanamine(Non-covalent)

9JI.1: 21 residues within 4Å: Chain A: L.50, G.51, S.52, G.53, G.56, K.57, V.58, A.76, K.78, M.79, L.80, L.92, E.126, Y.127, C.128, F.129, Y.130, G.131, L.204, C.214, D.215 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.50, A:K.78, A:L.80 Hydrogen bonds: A:C.128 pi-Cation interactions: A:R.48, A:K.78

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: G.208, Y.337 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuber, A. et al., Avapritinib-based SAR studies unveil a binding pocket in KIT and PDGFRA. Nat Commun (2024)

Release Date

2023-12-27

Peptides

Platelet-derived growth factor receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-derived growth factor receptor alpha

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