SMTL ID : 8pr4.1

Dynactin pointed end bound to JIP3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-2-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: G.21, E.22, A.23, F.24, K.26, D.140, G.142, Y.143, R.144, G.168, H.172, E.208, K.211, V.212, G.307, G.308, T.309, M.311, N.351 Chain D: L.252, R.255 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:E.22, A:A.23, A:F.24, A:F.24, A:D.140, A:Y.143, A:R.144, A:E.208, A:K.211, A:G.308, A:N.351, D:R.255 Salt bridges: A:K.26, A:K.26

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain D: C.30, C.33, C.284, C.287 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.30, D:C.33, D:C.284, D:C.287 ZN.3: 4 residues within 4Å: Chain D: C.51, C.54, C.70, C.73 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.51, D:C.54, D:C.70, D:C.73 ZN.4: 4 residues within 4Å: Chain D: C.76, C.79, C.111, C.114 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.76, D:C.79, D:C.111, D:C.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, K. et al., Molecular mechanism of dynein-dynactin complex assembly by LIS1. Science (2024)

Release Date

2024-03-27

Peptides

Arp11: A
Dynactin 6: B
Dynactin subunit 5: C
Dynactin subunit 4: D
C-Jun-amino-terminal kinase-interacting protein 3: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
U

C
W

D
Y

E
X

F
x

Arp11

Dynactin 6

Dynactin subunit 5

Dynactin subunit 4

C-Jun-amino-terminal kinase-interacting protein 3

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