SMTL ID : 8pta.1 (2 other biounits)

JNK1 covalently bound to BD837 cyclohexenone based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x CIF: methyl (1R,3S)-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]carbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate(Covalent)

CIF.1: 16 residues within 4Å: Chain A: I.34, S.36, A.38, V.42, E.111, L.112, M.113, D.114, A.115, N.116, C.118, Q.119, V.160, L.170, Y.193, E.219 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.34, A:V.42, A:V.42, A:Q.119, A:V.160, A:L.170 Hydrogen bonds: A:S.36, A:M.113, A:M.113, A:N.116, A:N.116, A:Q.119, A:Q.119

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: N.83, H.84, K.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balint, D. et al., Reversible covalent c-Jun N-terminal kinase inhibitors targeting a specific cysteine by precision-guided Michael-acceptor warheads. Nat Commun (2024)

Release Date

2024-07-24

Peptides

Mitogen-activated protein kinase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 8

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