SMTL ID : 8pts.1

human GUK1 in complex with compound AT8001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x EIF: [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate(Non-covalent)

EIF.1: 13 residues within 4Å: Chain A: S.37, R.41, R.44, Y.53, E.72, H.73, A.74, F.76, Y.81, G.82, T.83 Chain B: E.27, K.182 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.37, A:Y.53, A:Y.53, A:Y.53, A:T.83 Water bridges: A:H.73, A:H.73, A:D.103 Salt bridges: A:R.41, A:R.44, A:E.72 EIF.2: 12 residues within 4Å: Chain B: S.37, R.41, R.44, Y.53, E.72, H.73, A.74, F.76, Y.81, G.82, T.83 Ligands: GOL.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.37, B:Y.53, B:Y.53, B:T.83 Water bridges: B:R.44, B:R.44, B:D.103 Salt bridges: B:R.41, B:R.44, B:E.72

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain B: S.37, E.72, T.83, L.100, D.101, V.102 Ligands: EIF.2 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.37, B:S.37, B:D.101, B:D.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chazot, A. et al., The activation cascade of the broad-spectrum antiviral bemnifosbuvir characterized at atomic resolution. Plos Biol. (2024)

Release Date

2024-07-24

Peptides

Guanylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Guanylate kinase