SMTL ID : 8pty.1

Cryo-EM structure of human Elp123 in complex with 5'-deoxyadenosine and methionine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 10 residues within 4Å: Chain C: C.99, H.101, I.108, C.109, C.112, Q.125, S.126, R.223, R.260 Ligands: MET.3 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Ligand interactions Metal complexes: C:C.99, C:C.109, C:C.112, MET.3

1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)

5AD.2: 12 residues within 4Å: Chain C: Y.111, C.112, P.113, Q.248, H.284, M.286, Y.318, P.319, T.320, L.321, R.367 Ligands: MET.3 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.111, C:Q.248, C:Q.248, C:L.321

1 x MET: METHIONINE(Non-covalent)

MET.3: 10 residues within 4Å: Chain C: S.126, G.172, T.173, E.221, T.222, R.223, G.246, R.260 Ligands: SF4.1, 5AD.2 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:E.221 Hydrogen bonds: C:T.222, C:G.246 Salt bridges: C:R.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbassi, N.E. et al., Cryo-EM structures of the human Elongator complex at work. Nat Commun (2024)

Release Date

2024-04-17

Peptides

Elongator complex protein 1: A
Elongator complex protein 2: B
Elongator complex protein 3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Elongator complex protein 1

Elongator complex protein 2

Elongator complex protein 3

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