SMTL ID : 8pur.1

DexyHemoglobin structure from serial synchrotron crystallography with fixed target

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 22 residues within 4Å: Chain A: M.32, T.39, Y.42, F.43, H.45, F.46, H.58, K.61, V.62, A.65, L.66, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.129, V.132, L.136 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:Y.42, A:F.43, A:F.43, A:L.83, A:L.91, A:V.93, A:F.98, A:L.101, A:V.132, A:L.136 Water bridges: A:H.45 Salt bridges: A:H.45, A:K.61 pi-Stacking: A:H.58, A:H.58 Metal complexes: A:H.87 HEM.2: 21 residues within 4Å: Chain B: L.31, T.38, F.41, F.42, F.45, H.63, K.66, V.67, S.70, F.71, F.85, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, V.137, L.141 21 PLIP interactions: 21 interactions with chain B, Hydrophobic interactions: B:T.38, B:F.41, B:F.41, B:F.42, B:F.42, B:F.42, B:V.67, B:V.67, B:F.71, B:L.88, B:L.91, B:L.96, B:N.102, B:L.106, B:V.137, B:L.141 Salt bridges: B:H.63, B:K.66, B:K.66 pi-Stacking: B:H.63 Metal complexes: B:H.92 HEM.3: 22 residues within 4Å: Chain C: M.32, T.39, Y.42, F.43, H.45, F.46, H.58, K.61, V.62, A.65, L.66, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.129, V.132, L.136 16 PLIP interactions: 16 interactions with chain C, Hydrophobic interactions: C:Y.42, C:F.43, C:F.43, C:L.83, C:L.91, C:V.93, C:F.98, C:L.101, C:V.132, C:L.136 Water bridges: C:H.45 Salt bridges: C:H.45, C:K.61 pi-Stacking: C:H.58, C:H.58 Metal complexes: C:H.87 HEM.4: 21 residues within 4Å: Chain D: L.31, T.38, F.41, F.42, F.45, H.63, K.66, V.67, S.70, F.71, F.85, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, V.137, L.141 21 PLIP interactions: 21 interactions with chain D, Hydrophobic interactions: D:T.38, D:F.41, D:F.41, D:F.42, D:F.42, D:F.42, D:V.67, D:V.67, D:F.71, D:L.88, D:L.91, D:L.96, D:N.102, D:L.106, D:V.137, D:L.141 Salt bridges: D:H.63, D:K.66, D:K.66 pi-Stacking: D:H.63 Metal complexes: D:H.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bjelcic, M. et al., Anaerobic fixed-target serial crystallography using sandwiched silicon nitride membranes. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-10-18

Peptides

Hemoglobin, alpha 1: AC
Hemoglobin subunit beta: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Hemoglobin, alpha 1

Hemoglobin subunit beta

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